Slot: bonds

Are bond parameters present in the topology?

URI: https://CCPBioSim.ac.uk/biosim-schema/bonds

Applicable Classes

Name

Description

Modifies Slot

Connectivity

Connectivity information included in the topology

no

Properties

Type and Range

Property

Value

Range

boolean

Domain Of

Connectivity

Cardinality and Requirements

Property

Value

Identifier and Mapping Information

Annotations

property

value

engine_mapping

[{‘engine’: ‘toptrajparser’, ‘key’: ‘bonds’}]

Schema Source

  • from schema: https://CCPBioSim.ac.uk/biosim-schema/

Mappings

Mapping Type

Mapped Value

self

https://CCPBioSim.ac.uk/biosim-schema/bonds

native

https://CCPBioSim.ac.uk/biosim-schema/bonds

LinkML Source

name: bonds
annotations:
  engine_mapping:
    tag: engine_mapping
    value:
    - engine: toptrajparser
      key: bonds
description: Are bond parameters present in the topology?
from_schema: https://CCPBioSim.ac.uk/biosim-schema/
rank: 1000
domain_of:
- Connectivity
range: boolean