Class: Connectivity

Connectivity information included in the topology.

URI: https://CCPBioSim.ac.uk/biosim-schema/Connectivity

         classDiagram
    class Connectivity
    click Connectivity href "../../classes/Connectivity/"
      Connectivity : bonds
        
      Connectivity : dihedrals
        
      
    

Slots

Name	Cardinality and Range	Description	Inheritance
bonds	0..1 boolean	Are bond parameters present in the topology?	direct
dihedrals	0..1 boolean	Are dihedral parameters present in the topology?	direct

Usages

used by	used in	type	used
TopologyMetadata	connectivity	range	Connectivity

Identifier and Mapping Information

Schema Source

• from schema: https://CCPBioSim.ac.uk/biosim-schema/

Mappings

Mapping Type	Mapped Value
self	https://CCPBioSim.ac.uk/biosim-schema/Connectivity
native	https://CCPBioSim.ac.uk/biosim-schema/Connectivity

LinkML Source

Direct

name: Connectivity
description: Connectivity information included in the topology.
from_schema: https://CCPBioSim.ac.uk/biosim-schema/
slots:
- bonds
- dihedrals

Induced

name: Connectivity
description: Connectivity information included in the topology.
from_schema: https://CCPBioSim.ac.uk/biosim-schema/
attributes:
  bonds:
    name: bonds
    annotations:
      engine_mapping:
        tag: engine_mapping
        value:
        - engine: toptrajparser
          key: bonds
    description: Are bond parameters present in the topology?
    from_schema: https://CCPBioSim.ac.uk/biosim-schema/
    rank: 1000
    owner: Connectivity
    domain_of:
    - Connectivity
    range: boolean
  dihedrals:
    name: dihedrals
    annotations:
      engine_mapping:
        tag: engine_mapping
        value:
        - engine: toptrajparser
          key: dihedrals
    description: Are dihedral parameters present in the topology?
    from_schema: https://CCPBioSim.ac.uk/biosim-schema/
    rank: 1000
    owner: Connectivity
    domain_of:
    - Connectivity
    range: boolean